ISDA: 9EMH

Deposition Date 2024-03-08

Release Date 2025-09-24

Last Version Date 2025-09-24

Entry Detail

PDB ID:

9EMH

Keywords:

TRANSFERASE

Title:

KOD-H4 DNA polymerase mutant in a binary complex with DNA:DNA containing two HNA nucleotides

Biological Source:

Source Organism:

Thermococcus kodakarensis KOD1 (Taxon ID: 69014)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.25

R-Value Work:

0.22

R-Value Observed:

0.22

Space Group:

P 21 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA polymerase
Chain IDs:A
Chain Length:774
Number of Molecules:1
Biological Source:Thermococcus kodakarensis KOD1

UniProt ID:D0VWU9 Pfam ID:PF03104, PF00136

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*AP*CP*CP*AP*CP*GP*GP*CP*CP*AP*CP*A)-3')
Chain IDs:B (auth: P)
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*CP*(6HT)P*(6HG)P*TP*GP*GP*CP*CP*GP*TP*GP*GP*TP*C)-3')
Chain IDs:C (auth: T)
Chain Length:16
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules