9EKC image
Deposition Date 2024-12-02
Release Date 2025-03-26
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9EKC
Keywords:
Title:
cryo-EM of CL1 tube (outer)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.80 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CL1 dimer
Chain IDs:A, B (auth: z), C (auth: B), D (auth: 0), E (auth: C), F (auth: 1), G (auth: D), H (auth: 2), I (auth: E), J (auth: 3), K (auth: F), L (auth: 4), M (auth: G), N (auth: 5), O (auth: H), P (auth: 6), Q (auth: I), R (auth: 7), S (auth: J), T (auth: 8), U (auth: K), V (auth: 9), W (auth: L), X (auth: AA), Y (auth: M), Z (auth: BA), AA (auth: N), BA (auth: CA), CA (auth: O), DA, EA (auth: P), FA (auth: EA), GA (auth: Q), HA (auth: FA), IA (auth: R), JA (auth: GA), KA (auth: S), LA (auth: HA), MA (auth: T), NA (auth: IA), OA (auth: U), PA (auth: JA), QA (auth: V), RA (auth: KA), SA (auth: W), TA (auth: LA), UA (auth: X), VA (auth: MA), WA (auth: Y), XA (auth: NA), YA (auth: Z), ZA (auth: OA), AB (auth: a), BB (auth: PA), CB (auth: b), DB (auth: QA), EB (auth: c), FB (auth: RA), GB (auth: d), HB (auth: SA), IB (auth: e), JB (auth: TA), KB (auth: f), LB (auth: UA), MB (auth: g), NB (auth: VA), OB (auth: h), PB (auth: WA), QB (auth: i), RB (auth: XA), SB (auth: j), TB (auth: YA), UB (auth: k), VB (auth: ZA), WB (auth: l), XB (auth: aA), YB (auth: m), ZB (auth: bA), AC (auth: n), BC (auth: cA), CC (auth: o), DC (auth: dA), EC (auth: p), FC (auth: eA), GC (auth: q), HC (auth: fA), IC (auth: r), JC (auth: gA), KC (auth: s), LC (auth: hA), MC (auth: t), NC (auth: iA), OC (auth: u), PC (auth: jA), QC (auth: v), RC (auth: kA), SC (auth: w), TC (auth: lA), UC (auth: x), VC (auth: mA), WC (auth: y), XC (auth: nA)
Chain Length:13
Number of Molecules:102
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Amphipathic Antimicrobial Peptides Illuminate a Reciprocal Relationship Between Self-assembly and Cytolytic Activity.
Angew.Chem.Int.Ed.Engl. 64 e202500040 e202500040 (2025)
PMID: 40073424 DOI: 10.1002/anie.202500040

Abstact

Amphipathic character, encoded within the polar sequence patterns of antimicrobial peptides, is a critical structural feature that influences membrane disruptive behavior. Similarly, polar sequence patterns induce self-assembly of amphipathic peptides, which results in the formation of ordered supramolecular structures. The relationship between self-assembly and membrane activity remains an open question of relevance for the development of effective antimicrobial peptides. Here, we report the structural investigation of a class of lytic peptides that self-assemble into filamentous nanomaterials. CryoEM analysis was employed to determine the structure of one of the filaments, which revealed that the peptides are self-assembled into a bilayer nanotube, in which the interaction between layers of amphipathic α-helices was mediated through hydrophobic interactions. The relative stability of the filament peptide assemblies depended on the influence of sequence modifications on the helical conformation. Antimicrobial assays indicated that cytolytic activity was associated with dynamic disassociation of the filamentous assemblies under the assay conditions. Structural modifications of the peptides that stabilized the filaments abrogated lytic activity. These results illuminate a reciprocal relationship between self-assembly and antimicrobial activity in this class of amphipathic peptides and that reversible assembly was critical for the observation of biological activity.

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