9EIT image
Deposition Date 2024-11-26
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9EIT
Keywords:
Title:
NCS.1 Fab in complex with N5 NA of A/shorebird/Delaware Bay/309/2016 (DB16, H10N5) -- 4 Fabs
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Influenza A virus (Taxon ID: 11320)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neuraminidase
Gene (Uniprot):NA
Chain IDs:C (auth: A), F (auth: D), I (auth: G), L (auth: P)
Chain Length:393
Number of Molecules:4
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:NCS.1 Heavy Chain
Chain IDs:A (auth: H), D (auth: I), G (auth: N), J (auth: S)
Chain Length:117
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:NCS.1 Light Chain
Chain IDs:B (auth: L), E (auth: M), H (auth: O), K (auth: T)
Chain Length:112
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural convergence and water-mediated substrate mimicry enable broad neuraminidase inhibition by human antibodies.
Nat Commun 16 7068 7068 (2025)
PMID: 40750617 DOI: 10.1038/s41467-025-62339-z

Abstact

Influenza has been responsible for multiple global pandemics and seasonal epidemics and claimed millions of lives. The imminent threat of a panzootic outbreak of avian influenza H5N1 virus underscores the urgent need for pandemic preparedness and effective countermeasures, including monoclonal antibodies (mAbs). Here, we characterize human mAbs that target the highly conserved catalytic site of viral neuraminidase (NA), termed NCS mAbs, and the molecular basis of their broad specificity. Cross-reactive NA-specific B cells were isolated by using stabilized NA probes of non-circulating subtypes. We found that NCS mAbs recognized multiple NAs of influenza A as well as influenza B NAs and conferred prophylactic protections in mice against H1N1, H5N1, and influenza B viruses. Cryo-electron microscopy structures of two NCS mAbs revealed that they rely on structural mimicry of sialic acid, the substrate of NA, by coordinating not only amino acid side chains but also water molecules, enabling inhibition of NA activity across multiple influenza A and B viruses, including avian influenza clade 2.3.4.4b H5N1 viruses. Our results provide a molecular basis for the broad reactivity and inhibitory activity of NCS mAbs targeting the catalytic site of NA through substrate mimicry.

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