9EI9 image
Deposition Date 2024-11-25
Release Date 2025-07-16
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9EI9
Keywords:
Title:
Cryo-EM structure of 5E10 Fab in complex with H3 influenza Victoria 2011 HA trimer
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.89 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:5E10 Fab Heavy chain
Chain IDs:G (auth: A), I (auth: H)
Chain Length:123
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1
Gene (Uniprot):HA
Chain IDs:A (auth: B), B (auth: C), E (auth: G)
Chain Length:334
Number of Molecules:3
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:5E10 Fab Light chain
Chain IDs:H (auth: D), J
Chain Length:111
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2
Gene (Uniprot):HA
Chain IDs:C (auth: E), D (auth: F), F (auth: I)
Chain Length:222
Number of Molecules:3
Biological Source:Influenza A virus
Ligand Molecules
Primary Citation
The N terminus of H3-influenza hemagglutinin as a site-of-vulnerability to neutralizing antibody.
Structure 33 1820 ? (2025)
PMID: 40816277 DOI: 10.1016/j.str.2025.07.015

Abstact

The N terminus of the H3 subtype of influenza virus hemagglutinin is ∼10 residues longer than the N termini of most other hemagglutinins. As conserved, exposed, and linear regions may be good vaccine targets, we investigated the vaccine utility of the extended H3-N terminus. First, we identified antibody 5E10, for which structure and binding analyses revealed recognition of the H3-N terminus. Second, we immunized mice with immunogens incorporating the H3-N terminus, boosted with hemagglutinin trimer, and isolated antibodies from immunogen-elicited B cells that bound both H3-N terminus and hemagglutinin trimer. However, hemagglutinin-complex structures of two such antibodies, 3864-6 and 3864-10, that neutralized H3-influenza strains, revealed only peripheral recognition of the hemagglutinin N terminus. Collectively, these results reveal the N terminus of H3 hemagglutinin to be a suboptimal vaccine target and suggest that-in addition to being conserved, flexible, and accessible-other factors influence the elicitation of potent broadly neutralizing responses.

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Primary Citation of related structures
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