9EGA image
Deposition Date 2024-11-21
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9EGA
Keywords:
Title:
Crystal Structure of a CE20 carbohydrate acetylesterase from Pedobacter psychrotolerans (PpCE20_II), with ancillary domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.35 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sialate O-acetylesterase
Gene (Uniprot):EV200_102244
Chain IDs:A, B
Chain Length:644
Number of Molecules:2
Biological Source:Pedobacter psychrotolerans
Primary Citation
Insights into a water-mediated catalytic triad architecture in CE20 carbohydrate esterases.
Nat Commun 16 7034 7034 (2025)
PMID: 40745183 DOI: 10.1038/s41467-025-62387-5

Abstact

Carbohydrate esterases modify polysaccharides by removing different ester moieties thereby affecting their physicochemical properties and their accessibility by glycoside hydrolases. We determined the full-length structures of two members (Fl8CE20_II and PpCE20_II) from the carbohydrate esterase family 20 (CE20) by X-ray crystallography that feature an ancillary domain, inserted into the catalytic SGNH-hydrolase domain. Detailed structural analysis identifies a so far undescribed catalytic triad architecture which lacks the typical aspartate for polarization of the histidine but instead reveals a precisely coordinated water molecule mediating contact between the His and Asp. This coordinated water in the Ser-His-(H2O-Asp/Asn) motif, as further confirmed by mutational studies and by determination of kinetic constants, is crucial for catalytic activity. We therefore term this active site architecture a water-mediated catalytic triad.

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Primary Citation of related structures
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