9EFJ image
Deposition Date 2024-11-20
Release Date 2025-11-19
Last Version Date 2025-11-26
Entry Detail
PDB ID:
9EFJ
Keywords:
Title:
Irreversible Mcl-1/HIT2 Complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.82 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.26
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Induced myeloid leukemia cell differentiation protein Mcl-1
Gene (Uniprot):MCL1
Chain IDs:A
Chain Length:152
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
A Fragment-Based Electrophile-First Approach to Target Histidine with Aryl-Fluorosulfates: Application to hMcl-1.
J.Med.Chem. ? ? ? (2025)
PMID: 41223148 DOI: 10.1021/acs.jmedchem.5c02199

Abstact

Aryl-fluorosulfates are mild electrophiles that are very stable in biological media and in vivo and can efficiently react with the side chains of Lys, Tyr, or His residues, when properly juxtaposed by a high-affinity ligand. A more powerful approach to derive novel ligands would consist of starting from the covalent adduct and building the ligand off those initial interactions. While this strategy has been proven for Cys with molecular fragments containing Cys targeting electrophiles such as acrylamides, a corresponding strategy with fluorosulfates targeting His/Lys/Tyr residues has yet to be reported. We report here that a fragment library of aryl-fluorosulfates, when deployed with proper biophysical screening strategies, can identify initial covalent fragments. We report on novel strategies to enhance the success rate of such electrophile-based fragment screening for His/Lys/Tyr residues and to characterize the resulting hits. As an application, we report on novel covalent fragment hits targeting hMcl-1 His 224.

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Primary Citation of related structures
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