9ECL image
Deposition Date 2024-11-14
Release Date 2025-09-24
Last Version Date 2025-10-01
Entry Detail
PDB ID:
9ECL
Keywords:
Title:
Structure of the human integrin beta2 transmembrane domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Conformers Calculated:
21
Conformers Submitted:
21
Selection Criteria:
all calculated structures submitted
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrin beta-2
Gene (Uniprot):ITGB2
Chain IDs:A
Chain Length:43
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Functional unfolding of the integrin alpha X transmembrane helix.
Proc.Natl.Acad.Sci.USA 122 e2507966122 e2507966122 (2025)
PMID: 40956891 DOI: 10.1073/pnas.2507966122

Abstact

In biological membranes, proteins face a fundamentally different environment than in water. To avoid untenable lipid contacts with polar backbone atoms, they use the continuous hydrogen bonding achieved by α-helices or β-barrels to traverse membranes. Here, we show that integrin αX, and by homology αM, undermine this paradigm by partially unfolding the N-terminal third of their transmembrane (TM) helix. Unfolding results in a dynamic, frayed helix that weakens the association with its partnering β2 subunit to lower the activation threshold of integrin αXβ2-mediated cell adhesion. The extent of unfolding depends on membrane geometry, thereby establishing a mechanism for sensing membrane properties. The combination of adhesive control with sensory capacity in integrin αXβ2 and αMβ2 may achieve membrane localization-dependent receptor activation in leukocyte phagocytosis. The unfolding of the αX TM helix arises from a high number of α-helix-destabilizing residues that TM helices in general approach but do not exceed. Accordingly, backbone dynamics of TM helices may disrupt hydrogen bonds, modulate protein function, and optimize TM helix rigidity.

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