9EAJ image
Entry Detail
PDB ID:
9EAJ
EMDB ID:
Title:
Structure of nanobody AT206 in complex with the angiotensin II type I receptor (AT1R)
Biological Source:
PDB Version:
Deposition Date:
2024-11-11
Release Date:
2025-03-05
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nanobody AT206,Type-1 angiotensin II receptor,Soluble cytochrome b562
Mutations:M232W, H327I, R331L
Chain IDs:A, B
Chain Length:583
Number of Molecules:2
Biological Source:Camelidae, Homo sapiens, Escherichia coli
Polymer Type:polypeptide(L)
Description:BAG2 Anti-BRIL Fab Heavy Chain
Chain IDs:C
Chain Length:231
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Description:BAG2 Anti-BRIL Fab Light Chain
Chain IDs:D
Chain Length:215
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Epitope-directed selection of GPCR nanobody ligands with evolvable function.
Proc.Natl.Acad.Sci.USA 122 e2423931122 e2423931122 (2025)
PMID: 40067891 DOI: 10.1073/pnas.2423931122

Abstact

Antibodies have the potential to target G protein-coupled receptors (GPCRs) with high receptor, cellular, and tissue selectivity; however, few antibody ligands for GPCRs exist. Here, we describe a generalizable selection method to enrich for GPCR ligands from a synthetic camelid antibody fragment (nanobody) library. Our strategy yielded multiple nanobody ligands for the angiotensin II type I receptor (AT1R), a prototypical GPCR and important drug target. We found that nanobodies readily act as allosteric modulators, encoding selectivity for both the receptor and chemical features of GPCR ligands. We then used structure-guided design to convert two nanobodies from allosteric ligands to competitive AT1R inhibitors through simple mutations. This work demonstrates that nanobodies can encode multiple pharmacological behaviors and have great potential as evolvable scaffolds for the development of next-generation GPCR therapeutics.

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