9EA9 image
Deposition Date 2024-11-10
Release Date 2025-09-17
Last Version Date 2025-09-17
Entry Detail
PDB ID:
9EA9
Title:
Crystal structure of BoNT/A-NTNH-HA70 -VHH_F12-VHH_H7-Fab_NTNH complex
Biological Source:
Source Organism:
Clostridium botulinum (Taxon ID: 1491)
Vicugna pacos (Taxon ID: 30538)
Mus sp. (Taxon ID: 10095)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.93 Å
R-Value Free:
0.30
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 42 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Botulinum neurotoxin type A
Gene (Uniprot):botA
Chain IDs:A
Chain Length:1296
Number of Molecules:1
Biological Source:Clostridium botulinum
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-toxic nonhemagglutinin type A
Gene (Uniprot):ant
Chain IDs:B
Chain Length:1194
Number of Molecules:1
Biological Source:Clostridium botulinum
Polymer Type:polypeptide(L)
Molecule:Nanobody ciA-F12
Chain IDs:C
Chain Length:128
Number of Molecules:1
Biological Source:Vicugna pacos
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HA70/A1
Gene (Uniprot):ha70
Chain IDs:H (auth: E)
Chain Length:626
Number of Molecules:1
Biological Source:Clostridium botulinum
Polymer Type:polypeptide(L)
Molecule:Nanobody ciA-H7
Chain IDs:D (auth: F)
Chain Length:121
Number of Molecules:1
Biological Source:Vicugna pacos
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HA-70
Gene (Uniprot):ha70
Chain IDs:E (auth: I), F (auth: J), G (auth: D), I (auth: G), J (auth: H)
Chain Length:626
Number of Molecules:5
Biological Source:Clostridium botulinum
Polymer Type:polypeptide(L)
Molecule:anti-NTNH Fab
Chain IDs:K
Chain Length:105
Number of Molecules:1
Biological Source:Mus sp.
Polymer Type:polypeptide(L)
Molecule:anti-NTNH Fab
Chain IDs:N (auth: L)
Chain Length:103
Number of Molecules:1
Biological Source:Mus sp.
Polymer Type:polypeptide(L)
Molecule:anti-NTNH Fab
Chain IDs:L (auth: M)
Chain Length:117
Number of Molecules:1
Biological Source:Mus sp.
Polymer Type:polypeptide(L)
Molecule:anti-NTNH Fab
Chain IDs:M (auth: N)
Chain Length:94
Number of Molecules:1
Biological Source:Mus sp.
Primary Citation
A nut-and-bolt assembly of the bimodular large progenitor botulinum neurotoxin complex.
Sci Adv 11 eadx5831 ? (2025)
PMID: 40864694 DOI: 10.1126/sciadv.adx5831

Abstact

Botulinum neurotoxin serotype A (BoNT/A) is naturally produced by bacteria along with four nontoxic neurotoxin-associated proteins (NTNH, HA70, HA33, and HA17), forming a bimodular large progenitor toxin complex (L-PTC). The BoNT/A-NTNH complex protects the toxin from adverse environment, while the complex consisting of HA proteins facilitates toxin absorption during oral intoxication. How these two independent modules assemble into the L-PTC remains unclear. Here, we report the crystal structure of the BoNT/A-NTNH-HA70 complex at ~2.9-Å resolution. The structure reveals that the BoNT/A-NTNH complex is anchored into a concentric double β-barrel channel of trimeric HA70 through a short β-hairpin of NTNH (termed nLoop), resembling a nut-and-bolt attachment. We find that the nLoop of NTNH is strictly conserved across HA-containing BoNT complexes and that NTNH-HA70 binding is interchangeable among them. Furthermore, we demonstrate that the nLoop functions as a minimal motif enabling attachment of a protein-of-interest to the HA complex, with potential applications in oral biologics delivery.

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