9E9H image
Entry Detail
PDB ID:
9E9H
Title:
Crystal structure of human KRAS G12C covalently bound to DEL triazine compound 5
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-11-08
Release Date:
2025-02-26
Method Details:
Experimental Method:
Resolution:
1.65 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GTPase KRas
Mutations:C51S,C80L,C118S
Chain IDs:A
Chain Length:183
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Identification of Structurally Novel KRAS G12C Inhibitors through Covalent DNA-Encoded Library Screening.
J.Med.Chem. 68 4801 4817 (2025)
PMID: 39930787 DOI: 10.1021/acs.jmedchem.4c03071

Abstact

Covalent inhibition of the KRASG12C oncoprotein has emerged as a promising therapeutic approach for the treatment of nonsmall cell lung cancer (NSCLC). The identification of KRASG12C inhibitors has typically relied on the high-throughput screening (HTS) of libraries of cysteine-reactive small molecules or on the attachment of cysteine-reactive warheads to noncovalent binders of KRAS. Such screening approaches have historically been limited in the size and diversity of molecules that could be effectively screened. DNA-encoded library (DEL) screening has emerged as a promising approach to accelerate the preparation and screening of incredibly large and diverse chemical libraries. Here, we describe the design and synthesis of a covalent DEL to screen ∼16 million compounds against KRASG12C. We additionally describe the hit identification, validation, and structure-based optimization that culminated in the identification of a series of structurally novel, potent, and selective covalent inhibitors of KRASG12C with good pharmacokinetic profiles and promising in vivo pharmacodynamic effects.

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