9E99 image
Deposition Date 2024-11-07
Release Date 2025-02-19
Last Version Date 2025-02-19
Entry Detail
PDB ID:
9E99
Keywords:
Title:
Cryo-EM reconstruction of Escherichia phage N4 capsid
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Major capsid protein
Gene (Uniprot):56
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:401
Number of Molecules:9
Biological Source:Escherichia phage N4
Polymer Type:polypeptide(L)
Molecule:32 kDa protein
Chain IDs:J, K, L
Chain Length:279
Number of Molecules:3
Biological Source:Escherichia phage N4
Ligand Molecules
Primary Citation
Atlas of Interactions Between Decoration Proteins and Major Capsid Proteins of Coliphage N4.
Viruses 17 ? ? (2024)
PMID: 39861808 DOI: 10.3390/v17010019

Abstact

Coliphage N4 is a representative species of the Schitoviridae family of bacteriophages. Originally structurally studied in 2008, the capsid structure was solved to 14 Å to reveal an interesting arrangement of Ig-like decoration proteins across the surface of the capsid. Herein, we present a high-resolution N4 structure, reporting a 2.45 Å map of the capsid obtained via single particle cryogenic-electron microscopy. Structural analysis of the major capsid proteins (MCPs) and decoration proteins (gp56 and gp17) of phage N4 reveals a pattern of interactions across the capsid that are mediated by structurally homologous domains of gp17. In this study, an analysis of the complex interface contacts allows us to confirm that the gp17 Ig-like decoration proteins of N4 are likely employed by the virus to increase the capsid's structural integrity.

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Primary Citation of related structures