9E69 image
Deposition Date 2024-10-29
Release Date 2025-07-16
Last Version Date 2026-02-04
Entry Detail
PDB ID:
9E69
Keywords:
Title:
Antibody 5E10
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
2.63 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 32
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy Chain of antibody 5E10
Chain IDs:C (auth: A)
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light Chain of antibody 5E10
Chain IDs:D (auth: B)
Chain Length:230
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Heavy chain of antibody 5E10
Chain IDs:A (auth: H)
Chain Length:238
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light Chain of antibody 5E10
Chain IDs:B (auth: L)
Chain Length:229
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The N terminus of H3-influenza hemagglutinin as a site-of-vulnerability to neutralizing antibody.
Structure 33 1820 1830.e4 (2025)
PMID: 40816277 DOI: 10.1016/j.str.2025.07.015

Abstact

The N terminus of the H3 subtype of influenza virus hemagglutinin is ∼10 residues longer than the N termini of most other hemagglutinins. As conserved, exposed, and linear regions may be good vaccine targets, we investigated the vaccine utility of the extended H3-N terminus. First, we identified antibody 5E10, for which structure and binding analyses revealed recognition of the H3-N terminus. Second, we immunized mice with immunogens incorporating the H3-N terminus, boosted with hemagglutinin trimer, and isolated antibodies from immunogen-elicited B cells that bound both H3-N terminus and hemagglutinin trimer. However, hemagglutinin-complex structures of two such antibodies, 3864-6 and 3864-10, that neutralized H3-influenza strains, revealed only peripheral recognition of the hemagglutinin N terminus. Collectively, these results reveal the N terminus of H3 hemagglutinin to be a suboptimal vaccine target and suggest that-in addition to being conserved, flexible, and accessible-other factors influence the elicitation of potent broadly neutralizing responses.

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Primary Citation of related structures
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