ISDA: 9E5Y

Deposition Date 2024-10-28

Release Date 2025-11-19

Last Version Date 2025-11-19

Entry Detail

PDB ID:

9E5Y

Keywords:

replication/DNA

Title:

T4 Bacteriophage Replicative Polymerase Captured in Polymerase Exchange State 1

Biological Source:

Source Organism:

Escherichia phage T4 (Taxon ID: 2681598)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.57 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:DNA-directed DNA polymerase
Gene (Uniprot):43
Chain IDs:A, C
Chain Length:898
Number of Molecules:2
Biological Source:Escherichia phage T4

UniProt ID:P04415 Pfam ID:PF03104, PF00136 EC:2.7.7.7

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Sliding clamp
Gene (Uniprot):45
Chain IDs:B, D, E
Chain Length:228
Number of Molecules:3
Biological Source:Escherichia phage T4

UniProt ID:P04525 Pfam ID:PF02916, PF09116

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-AGC TAT GAC CAT GAT TAC GAA TTG ddC-3')
Chain IDs:F (auth: P)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (38-MER)
Chain IDs:G (auth: T)
Chain Length:38
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Structural insights into the exchange mechanism of a replicative DNA polymerase

Feng, X, Spiering, M.M, Santos, R, Benkovic, S.J, Li, H.Show

To Be Published ? ? ? (?)

Primary Citation of related structures

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