9E3B image
Deposition Date 2024-10-23
Release Date 2025-02-19
Last Version Date 2025-02-19
Entry Detail
PDB ID:
9E3B
Keywords:
Title:
Cryo-EM structure of PRMT5/WDR77 in complex with 6S complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.06 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein arginine N-methyltransferase 5
Gene (Uniprot):PRMT5
Chain IDs:A, C, G, J
Chain Length:637
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methylosome protein WDR77
Gene (Uniprot):WDR77
Chain IDs:B, E, H, K
Chain Length:347
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methylosome subunit pICln
Gene (Uniprot):CLNS1A
Chain IDs:D, F, I, L
Chain Length:241
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small nuclear ribonucleoprotein Sm D1
Gene (Uniprot):SNRPD1
Chain IDs:M, N, O, P
Chain Length:128
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation

Abstact

Protein arginine methyltransferase (PRMT) 5 is an essential arginine methyltransferase responsible for the majority of cellular symmetric dimethyl-arginine marks. PRMT5 uses substrate adaptors such as pICln, RIOK1, and COPR5 to recruit and methylate a wide range of substrates. Although the substrate adaptors play important roles in substrate recognition, how they direct PRMT5 activity towards specific substrates remains incompletely understood. Using biochemistry and cryogenic electron microscopy, we show that these adaptors compete for the same binding site on PRMT5. We find that substrate adaptor and substrate complexes are bound to PRMT5 through two peptide motifs, enabling these adaptors to act as flexible tethering modules to enhance substrate methylation. Taken together, our results shed structural and mechanistic light on the PRMT5 substrate adaptor function and the biochemical nature of PRMT5 interactors.

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Primary Citation of related structures