9E31 image
Entry Detail
PDB ID:
9E31
Keywords:
Title:
Discovery of Potent, Highly Selective and Efficacious SMARCA2 Degraders - Compound 6
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-10-23
Release Date:
2024-12-18
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Isoform Short of Probable global transcription activator SNF2L2
Chain IDs:A, B, C
Chain Length:123
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Discovery of Potent, Highly Selective, and Efficacious SMARCA2 Degraders.
J.Med.Chem. 68 1134 1154 (2025)
PMID: 39570797 DOI: 10.1021/acs.jmedchem.4c01878

Abstact

We describe the identification of selective SMARCA2, VHL-based heterobifunctional degraders. Structurally novel indolo[1,2-a]quinazolin-5(7H)-one SMARCA bromodomain binders were optimized and then converted to SMARCA2 degraders by linking them to well-defined VHL ligands. Our exploration led to the discovery of potent and selective degraders of SMARCA2 over the SMARCA4 paralog, leading to potent and selective growth inhibition of SMARCA4 mutant versus wild type cell lines. We further highlight the optimization of the pharmacokinetic profile of a subset of compounds leading to potent and selective degradation of SMARCA2 in the xenograft model. These compounds provide valuable tools with desirable properties for continued exploration of the biology defining the susceptibility of SMARCA4 mutant cancers to selective loss of SMARCA2.

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