9E2M image
Deposition Date 2024-10-22
Release Date 2025-05-21
Last Version Date 2025-12-03
Entry Detail
PDB ID:
9E2M
Keywords:
Title:
Variediene synthase with one cyclase (conformation 3)
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Variediene synthase
Gene (Uniprot):EvVS
Chain IDs:A, B, C, D, E, F
Chain Length:725
Number of Molecules:6
Biological Source:Aspergillus stellatus
Ligand Molecules
Primary Citation
Structure of bifunctional variediene synthase yields unique insight on biosynthetic diterpene assembly and cyclization.
Nat Commun 16 5089 5089 (2025)
PMID: 40456796 DOI: 10.1038/s41467-025-60537-3

Abstact

An unusual family of bifunctional terpene synthases has been identified in which a prenyltransferase assembles 5-carbon precursors to form C20 geranylgeranyl diphosphate (GGPP), which is then converted into a polycyclic product by a cyclase. Here, we report the cryo-EM structure of a massive, 495-kD bifunctional terpene synthase, variediene synthase from Emericella variecolor (EvVS). The structure reveals a hexameric prenyltransferase core sandwiched between two triads of cyclases. Surprisingly, GGPP is not channeled intramolecularly from the prenyltransferase to the cyclase, but instead is channeled intermolecularly to a non-native cyclase as indicated by substrate competition experiments. These results inform our understanding of carbon management in the greater family of bifunctional terpene synthases, hundreds of which have been identified in fungi. Using sequence similarity networks, we also report the identification of bifunctional terpene synthases in an animal, Adineta steineri, a bdelloid rotifer indigenous to freshwater environments.

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Chemical

Disease

Primary Citation of related structures
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