9E28 image
Deposition Date 2024-10-21
Release Date 2025-07-09
Last Version Date 2026-01-21
Entry Detail
PDB ID:
9E28
Keywords:
Title:
Cryo-EM structure of Phi dynein tail
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Method Details:
Experimental Method:
Resolution:
4.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 heavy chain 1
Gene (Uniprot):DYNC1H1
Chain IDs:A, G, J (auth: e), K (auth: f)
Chain Length:4843
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Cytoplasmic dynein 1 light intermediate chain 2
Gene (Uniprot):DYNC1LI2
Chain IDs:B, C
Chain Length:492
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Isoform 2C of Cytoplasmic dynein 1 intermediate chain 2
Gene (Uniprot):DYNC1I2
Chain IDs:D, H, L (auth: g), M (auth: h)
Chain Length:612
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain roadblock-type 1
Gene (Uniprot):DYNLRB1
Chain IDs:E, F
Chain Length:96
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain 1, cytoplasmic
Gene (Uniprot):DYNLL1
Chain IDs:I (auth: d), N (auth: i)
Chain Length:612
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dynein light chain Tctex-type 1
Gene (Uniprot):DYNLT1
Chain IDs:O (auth: k), P (auth: v)
Chain Length:113
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM captures early intermediate steps in dynein activation by LIS1.
Nat Commun 16 7054 7054 (2025)
PMID: 40750582 DOI: 10.1038/s41467-025-62185-z

Abstact

Cytoplasmic dynein-1 (dynein) is an essential molecular motor in eukaryotic cells. Dynein primarily exists in an autoinhibited Phi state and requires conformational changes to assemble with its cofactors and form active transport complexes. LIS1, a key dynein regulator, enhances dynein activation and assembly. Using cryo-EM and a human dynein-LIS1 sample incubated with ATP, we map the conformational landscape of dynein activation by LIS1 and identify an early intermediate state that we propose precedes the previously identified dynein-LIS1 Chi state. Mutations that disrupt this species, which we termed "Pre-Chi", lead to motility defects in vitro, emphasizing its functional importance. Together, our findings provide insights into how LIS1 relieves dynein autoinhibition during the activation pathway.

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Disease

Primary Citation of related structures
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