9E0J image
Deposition Date 2024-10-18
Release Date 2025-05-07
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9E0J
Keywords:
Title:
Structure and evolution of Photosystem I in the early-branching cyanobacterium Anthocerotibacter panamensis
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Chain IDs:A (auth: G), K (auth: a), U (auth: A)
Chain Length:785
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Chain IDs:C (auth: H), M (auth: b), W (auth: B)
Chain Length:749
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Chain IDs:D (auth: K), N (auth: c), X (auth: C)
Chain Length:81
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Chain IDs:E (auth: N), O (auth: d), Y (auth: D)
Chain Length:143
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Chain IDs:F (auth: O), P (auth: e), Z (auth: E)
Chain Length:64
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Chain IDs:G (auth: P), Q (auth: f), AA (auth: F)
Chain Length:177
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Chain IDs:H (auth: Q), R (auth: i), BA (auth: I)
Chain Length:32
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Chain IDs:I (auth: R), S (auth: j), CA (auth: J)
Chain Length:41
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Chain IDs:J (auth: S), T (auth: l), DA (auth: L)
Chain Length:160
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Chain IDs:B (auth: T), L (auth: m), V (auth: M)
Chain Length:32
Number of Molecules:3
Biological Source:Anthocerotibacter panamensis
Primary Citation
Structure and evolution of photosystem I in the early-branching cyanobacterium Anthocerotibacter panamensis.
Proc.Natl.Acad.Sci.USA 122 e2427090122 e2427090122 (2025)
PMID: 40366692 DOI: 10.1073/pnas.2427090122

Abstact

Thylakoid-free cyanobacteria are thought to preserve ancestral traits of early-evolving organisms capable of oxygenic photosynthesis. However, and until recently, photosynthesis studies in thylakoid-free cyanobacteria were only possible in the model strain Gloeobacter violaceus, limiting our understanding of photosynthesis evolution. Here, we report the isolation, biochemical characterization, cryo-EM structure, and phylogenetic analysis of photosystem I (PSI) from a recently discovered thylakoid-free cyanobacterium, Anthocerotibacter panamensis, a distant relative of the genus Gloeobacter. We find that A. panamensis PSI exhibits a distinct carotenoid composition and has one conserved low-energy chlorophyll site, which was lost in G. violaceus. Furthermore, PSI in thylakoid-free cyanobacteria has changed at the sequence level to a degree comparable to that of other strains, yet its subunit composition and oligomeric form might be identical to that of the most recent common ancestor of cyanobacteria. This study therefore provides a glimpse into the ancient evolution of photosynthesis.

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