9DXX image
Deposition Date 2024-10-12
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
9DXX
Keywords:
VIRAL PROTEIN
Title:
Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with D-peptide
Biological Source:
Source Organism:
Influenza A virus (A/Puerto Rico/8/1934(H1N1)) (Taxon ID: 211044)
Phage display vector pdvec0 (Taxon ID: 2267868)
Host Organism:
Trichoplusia ni
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.37 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
H 3 2
9DXX validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA1 chain
Gene (Uniprot):HA
Chain IDs:A
Chain Length:328
Number of Molecules:1
Biological Source:Influenza A virus (A/Puerto Rico/8/1934(H1N1))
UniProt ID:P03452 Pfam ID:PF00509
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemagglutinin HA2 chain
Gene (Uniprot):HA
Chain IDs:B
Chain Length:176
Number of Molecules:1
Biological Source:Influenza A virus (A/Puerto Rico/8/1934(H1N1))
UniProt ID:P03452 Pfam ID:PF00509
Polymer Type:polypeptide(D)
Molecule:D-peptide
Chain IDs:C (auth: E)
Chain Length:31
Number of Molecules:1
Biological Source:Phage display vector pdvec0
Ligand Molecules
K
NAG
TOE
Primary Citation
De Novo design of D-peptide ligands
To Be Published ? ? ? (?)
Primary Citation of related structures
9DXX