9DU5 image
Deposition Date 2024-10-02
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9DU5
Keywords:
Title:
Cryo-EM structure of phosphoglucomutase from Thermococcus kodakarensis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.45 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phosphoglucomutase/phosphomannomutase
Gene (Uniprot):Tko1621
Chain IDs:A, B, C, D
Chain Length:456
Number of Molecules:4
Biological Source:Thermococcus kodakarensis
Ligand Molecules
Primary Citation
A Bifunctional Phosphoglucomutase/Phosphomannomutase from Thermococcus kodakarensis : Biophysical Analysis and Cryo-EM Structure.
Biomolecules 15 ? ? (2025)
PMID: 40149855 DOI: 10.3390/biom15030319

Abstact

Phosphoglucomutase (EC 5.4.2.2., PGM), a key enzyme of glycogenolysis and glycogenesis, catalyzes the interconversion of glucose 1-phosphate and glucose 6-phosphate, whereas phosphomannomutase (EC 5.4.2.8., PMM) transfers the phosphate group from the 1' to the 6', or from the 6' to the 1' position in mannose phosphate. However, in the hyperthermophilic archaeon Thermococcus kodakarensis, a single gene, Tk1108, encodes a protein with both PGM and PMM activities. Here, we report biophysical analysis and the 2.45 Å resolution cryo-EM structure of this novel enzyme. Our results demonstrate a specific arrangement of the four subunits in the quaternary structure, displaying a distinct catalytic cleft required for the bifunctional activity at extremely high temperatures. To the best of our knowledge, this is the first biophysical characterization and cryo-EM structure elucidation of a thermostable, bifunctional PGM/PMM.

Legend

Protein

Chemical

Disease

Primary Citation of related structures