9DRN image
Entry Detail
PDB ID:
9DRN
Keywords:
Title:
Crystal structure of Mycobacterium tuberculosis biotin protein ligase in complex with Bio-4
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-09-25
Release Date:
2025-04-09
Method Details:
Experimental Method:
Resolution:
2.98 Å
R-Value Free:
0.27
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Biotin--[acetyl-CoA-carboxylase] ligase
Chain IDs:A (auth: B), B (auth: A)
Chain Length:264
Number of Molecules:2
Biological Source:Mycobacterium tuberculosis
Ligand Molecules
Primary Citation
Metabolically Stable Adenylation Inhibitors of Biotin Protein Ligase as Antibacterial Agents.
J.Med.Chem. 68 3065 3087 (2025)
PMID: 39823202 DOI: 10.1021/acs.jmedchem.4c02299

Abstact

The antibacterial agent Bio-AMS is metabolized in vivo through hydrolysis of the central acyl-sulfamide linker leading to high clearance and release of a moderately cytotoxic metabolite M1. Herein, we disclose analogues designed to prevent the metabolism of the central acyl-sulfamide moiety through steric hindrance or attenuation of the acyl-sulfamide electrophilicity. Bio-9 was identified as a metabolically stable analogue with a single-digit nanomolar dissociation constant for biotin protein ligase (BPL) and minimum inhibitory concentrations (MICs) against Mycobacterium tuberculosis and Staphylococcus aureus ranging from 0.2 to 20 μM. The antibacterial activity of Bio-9 was dependent on BPL expression level and was more than 70-fold better against a strain underexpressing BPL and, conversely, more than 5-fold less effective against a strain overexpressing BPL. Pharmacokinetic and metabolic studies demonstrated that Bio-9 was metabolically stable in vivo, showing negligible hydrolysis that translated to substantially reduced clearance and concomitantly boosted drug exposure and half-life compared to Bio-AMS.

Legend

Protein

Chemical

Disease

Primary Citation of related structures