9DRL image
Deposition Date 2024-09-25
Release Date 2025-08-06
Last Version Date 2025-10-15
Entry Detail
PDB ID:
9DRL
Keywords:
Title:
Cryo-EM structure of the T33-549 tetrahedral cage
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:T33-549_B
Chain IDs:A, C, E, G, I, K, M, O, Q, S, U, W
Chain Length:511
Number of Molecules:12
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:T33-549_A
Chain IDs:B, D, F, H, J, L, N, P, R, T, V, X
Chain Length:400
Number of Molecules:12
Biological Source:synthetic construct
Ligand Molecules
Primary Citation

Abstact

Directional interactions that generate regular coordination geometries are a powerful means of guiding molecular and colloidal self-assembly, but implementing such high-level interactions with proteins remains challenging due to their complex shapes and intricate interface properties. Here we describe a modular approach to protein nanomaterial design inspired by the rich chemical diversity that can be generated from the small number of atomic valencies. We design protein building blocks using deep learning-based generative tools, incorporating regular coordination geometries and tailorable bonding interactions that enable the assembly of diverse closed and open architectures guided by simple geometric principles. Experimental characterization confirms the successful formation of more than 20 multicomponent polyhedral protein cages, two-dimensional arrays and three-dimensional protein lattices, with a high (10%-50%) success rate and electron microscopy data closely matching the corresponding design models. Due to modularity, individual building blocks can assemble with different partners to generate distinct regular assemblies, resulting in an economy of parts and enabling the construction of reconfigurable networks for designer nanomaterials.

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Protein

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Disease

Primary Citation of related structures
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