9DR1 image
Deposition Date 2024-09-24
Release Date 2024-10-09
Last Version Date 2025-02-12
Entry Detail
PDB ID:
9DR1
Keywords:
TRANSFERASE/DNA/RNA
Title:
E. coli RNA polymerase consensus volume with a bound fluoride riboswitch in the ligand-bound state
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9DR1 validation report
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (39-MER)
Chain IDs:A
Chain Length:30
Number of Molecules:1
Biological Source:Escherichia coli
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (30-MER)
Chain IDs:B
Chain Length:30
Number of Molecules:1
Biological Source:Escherichia coli
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit alpha
Chain IDs:C (auth: G), D (auth: H)
Chain Length:231
Number of Molecules:2
Biological Source:Escherichia coli
UniProt ID:P0A7Z4 Pfam ID:PF01193, PF01000
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta
Chain IDs:E (auth: I)
Chain Length:1340
Number of Molecules:1
Biological Source:Escherichia coli
UniProt ID:P0A8V2 Pfam ID:PF04563, PF04561, PF04565, PF10385, PF00562, PF04560
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit beta'
Chain IDs:F (auth: J)
Chain Length:1358
Number of Molecules:1
Biological Source:Escherichia coli
UniProt ID:P0A8T7 Pfam ID:PF04997, PF00623, PF04983, PF05000, PF04998
Protein Blast
Polymer Type:polypeptide(L)
Molecule:DNA-directed RNA polymerase subunit omega
Chain IDs:G (auth: K)
Chain Length:79
Number of Molecules:1
Biological Source:Escherichia coli
UniProt ID:P0A800 Pfam ID:PF01192
Polymer Type:polyribonucleotide
Molecule:RNA (5'-R(P*UP*GP*GP*UP*AP*GP*GP*AP*GP*U)-3')
Chain IDs:H (auth: R)
Chain Length:21
Number of Molecules:1
Biological Source:Escherichia coli
Ligand Molecules
MG
Primary Citation
Structural basis of RNA-mediated regulation of transcriptional pausing.
To Be Published ? ? ? (?)
Primary Citation of related structures
9DR1