9DP2 image
Entry Detail
PDB ID:
9DP2
Keywords:
HYDROLASE/DNA
Title:
APE1 N174A Product Complex with Abasic DNA
Biological Source:
Source Organism:
Homo sapiens, synthetic construct
Host Organism:
Escherichia coli
PDB Version:
Deposition Date:
2024-09-20
Release Date:
2024-10-09
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.99 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1
9DP2 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Description:DNA repair nuclease/redox regulator APEX1, mitochondrial
Mutations:tr1-42, C138A, N174A
Chain IDs:A, B
Chain Length:276
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P27695 Pfam ID:PF03372 EC:4.2.99.18
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(P*(3DR)P*CP*GP*AP*CP*GP*GP*AP*TP*CP*C)-3')
Chain IDs:C (auth: D)
Chain Length:11
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3')
Chain IDs:D (auth: E)
Chain Length:10
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (5'-D(*GP*GP*AP*TP*CP*CP*GP*TP*CP*GP*GP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3')
Chain IDs:E (auth: F)
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
EDO
MN
Primary Citation
N174 Physically and Chemically Stabilizes Abasic DNA During the APE1 Endonuclease Reaction
To Be Published ? ? ? (?)
Primary Citation of related structures
9DP2