9DP0 image
Entry Detail
PDB ID:
9DP0
Keywords:
Title:
Fibrillar assembly of racemic, C-alpha methylated, macrocyclic beta-hairpins
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-09-20
Release Date:
2025-04-30
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P -1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:racemic, C-alpha methylated, macrocyclic beta-hairpin
Chain IDs:A, B, C, D
Chain Length:13
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
From Hydrogel to Crystal: A Molecular Design Strategy that Chemically Modifies Racemic Gel-Forming Peptides to Furnish Crystalline Fibrils Stabilized by Parallel Rippled beta-Sheets.
J.Am.Chem.Soc. 147 14377 14387 (2025)
PMID: 40252045 DOI: 10.1021/jacs.5c00671

Abstact

Rippled β-sheets are an underutilized secondary structural motif that hold promise in the rational design of peptide hydrogel materials with unique and desirable properties. Fully capitalizing on the design potential of this structural element, however, requires a high-resolution molecular understanding of the interactions they form within the supramolecular assemblies comprising the material - which are absent in all reports to date. Herein, we develop a molecular design strategy to modulate the phase state of β-hairpin peptides prone to form fibrillar gels into ones that assemble into crystal lattices, making high-resolution structural analysis possible. Truncating, cyclizing and Cα-methylating enantiomeric gel-forming peptides affords mirror-image macrocyclic peptides. Crystallography reveals that the enantiomeric macrocycles coassemble to form racemic fibril-like assemblies of unprecedented structure. Extended arrays of sheet-rich fibrils contain alternating blocks of enantiopure β-hairpins that assemble to form both canonical pleated β-sheets as well as stereocomplexed rippled β-sheets. This structure illuminates new molecular interactions to leverage in the design of next generation peptide hydrogels and provides the first crystallographic evidence of a parallel rippled β-sheet.

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