ISDA

Entry Detail

PDB ID:

9DOU

EMDB ID:

EMD-47091

Keywords:

RNA BINDING PROTEIN/RNA/DNA

Title:

Taeniopygia guttata R2 retrotransposon (R2Tg) initiating target-primed reverse transcription

Biological Source:

Source Organism:

Taeniopygia guttata

Host Organism:

Saccharomyces cerevisiae

PDB Version:

Deposition Date:

2024-09-19

Release Date:

2025-05-21

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.20 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Description:R2Tg retrotransposon ORF
Chain IDs:A
Chain Length:1390
Number of Molecules:1
Biological Source:Taeniopygia guttata

Polymer Type:polydeoxyribonucleotide
Description:28S DNA bottom strand, 3' side
Chain IDs:B
Chain Length:211
Number of Molecules:1
Biological Source:Taeniopygia guttata

Polymer Type:polydeoxyribonucleotide
Description:28S DNA bottom strand, 5' side (priming strand)
Chain IDs:C (auth: P)
Chain Length:13
Number of Molecules:1
Biological Source:Taeniopygia guttata

Polymer Type:polyribonucleotide
Description:R2Tg 3'UTR RNA
Chain IDs:D (auth: R)
Chain Length:333
Number of Molecules:1
Biological Source:Taeniopygia guttata

Polymer Type:polydeoxyribonucleotide
Description:28S DNA top strand
Chain IDs:E (auth: T)
Chain Length:211
Number of Molecules:1
Biological Source:Taeniopygia guttata

Ligand Molecules

TTP

Primary Citation

Structure and biochemistry-guided engineering of an all-RNA system for DNA insertion with R2 retrotransposons

Edmonds, K.H.K, Wilkinson, M.E, Strebinger, D, Chen, H, Lash, B, Zhu, S, Liu, D, Zilberzwige-Tal, S, Ladha, A, Walsh, M.L, Frangieh, C.J, Macrae, R, Wang, X, Zhang, F.Show

To Be Published ? ? ? (?)

Primary Citation of related structures