ISDA

Deposition Date 2024-09-18

Release Date 2025-02-12

Last Version Date 2025-03-19

Entry Detail

PDB ID:

9DOD

Keywords:

TRANSFERASE

Title:

Crystal structure of PRMT5:MEP50 in complex with PRT543

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Baculovirus expression vector pFastBac1-HM

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.50 Å

R-Value Free:

0.25

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

I 2 2 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Protein arginine N-methyltransferase 5
Gene (Uniprot):PRMT5
Chain IDs:A
Chain Length:636
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O14744 Pfam ID:PF17285, PF17286, PF05185 EC:2.1.1.320

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Methylosome protein WDR77
Gene (Uniprot):WDR77
Chain IDs:B
Chain Length:341
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9BQA1 Pfam ID:PF00400

Ligand Molecules

A1A79

EDO

Primary Citation

Phase Ib study of PRT543, an oral protein arginine methyltransferase 5 (PRMT5) inhibitor, in patients with advanced splicing factor-mutant myeloid malignancies.

Bewersdorf, J.P, Mi, X, Lu, B, Kuykendall, A, Sallman, D, Patel, M, Stevens, D, Philipovskiy, A, Sutamtewagul, G, Masarova, L, Keiffer, G, Verma, A, Bhagwat, N, Wang, M, Moore, A, Rager, J, Heiser, D, Ro, S, Hong, W.J, Abdel-Wahab, O, Stein, E.M.Show

Leukemia 39 765 769 (2025)

PMID: 39856223 DOI: 10.1038/s41375-025-02515-8

Primary Citation of related structures