9DNN image
Deposition Date 2024-09-17
Release Date 2025-10-01
Last Version Date 2025-11-19
Entry Detail
PDB ID:
9DNN
Title:
Insulin receptor in complex with both insulin and de novo designed site-2 binder "S2B".
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Method Details:
Experimental Method:
Resolution:
6.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Insulin receptor
Gene (Uniprot):Insr
Chain IDs:A, B
Chain Length:1372
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Insulin
Gene (Uniprot):INS
Chain IDs:C, D
Chain Length:110
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Designed site-2 binder S2B
Chain IDs:E, F
Chain Length:65
Number of Molecules:2
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Tuning insulin receptor signaling using de novo-designed agonists.
Mol.Cell 85 4064 ? (2025)
PMID: 41086805 DOI: 10.1016/j.molcel.2025.09.020

Abstact

Insulin binding induces conformational changes in the insulin receptor (IR) that activate the intracellular kinase domain and the protein kinase B (AKT) and mitogen-activated protein kinase (MAPK) pathways, regulating metabolism and proliferation. We reasoned that designed agonists inducing different IR conformational changes might induce different downstream responses. We used de novo protein design to generate binders for individual IR extracellular domains and fused them in different orientations with different conformational flexibility. We obtained a series of synthetic IR agonists that elicit a wide range of receptor autophosphorylation, MAPK activation, trafficking, and proliferation responses. We identified designs more potent than insulin, causing longer-lasting glucose lowering in vivo and retaining activity on disease-causing IR mutants, while largely avoiding the cancer cell proliferation induced by insulin. Our findings shed light on how changes in IR conformation and dynamics translate into downstream signaling, and with further development, our synthetic agonists could have therapeutic utility for metabolic and proliferative diseases.

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Primary Citation of related structures
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