9DLP image
Deposition Date 2024-09-11
Release Date 2025-06-04
Last Version Date 2025-06-04
Entry Detail
PDB ID:
9DLP
Keywords:
RNA BINDING PROTEIN
Title:
Cryo-EM structure of human TREX-2 complex bound to DDX39B(UAP56)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.79 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9DLP validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Germinal-center associated nuclear protein
Gene (Uniprot):MCM3AP
Chain IDs:A
Chain Length:648
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:O60318 Pfam ID:PF03399
Protein Blast
Polymer Type:polypeptide(L)
Molecule:PCI domain-containing protein 2
Gene (Uniprot):PCID2
Chain IDs:B
Chain Length:399
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q5JVF3 Pfam ID:PF01399
Protein Blast
Polymer Type:polypeptide(L)
Molecule:26S proteasome complex subunit SEM1
Gene (Uniprot):SEM1
Chain IDs:C
Chain Length:70
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P60896 Pfam ID:PF05160
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Spliceosome RNA helicase DDX39B
Gene (Uniprot):DDX39B
Chain IDs:D
Chain Length:433
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13838 Pfam ID:PF00270, PF00271
Ligand Molecules
ADP
MG
Primary Citation
Mechanisms of mRNP remodeling by human TREX-2 complex
To Be Published ? ? ? (?)
Primary Citation of related structures
9DLP