ISDA: 9DKP

Deposition Date 2024-09-09

Release Date 2025-09-17

Last Version Date 2025-09-17

Entry Detail

PDB ID:

9DKP

Keywords:

TRANSFERASE

Title:

The structure of human vacuolar protein sorting 34 catalytic domain bound to RD-I-53

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli BL21(DE3)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.16 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

P 41 21 2

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Phosphatidylinositol 3-kinase catalytic subunit type 3
Gene (Uniprot):PIK3C3
Chain IDs:A (auth: B)
Chain Length:594
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q8NEB9 Pfam ID:PF00613, PF00454 EC:2.7.1.137

Ligand Molecules

A1A6F

DMS

ETX

ETZ

Primary Citation

Facile Bacterial Production of Human Vacuolar Protein Sorting 34 Enables Structural Characterization of Novel Inhibitors

Abiodun, W.O, Dass, R, Tsubaki, E, Singleton, J.D, Fullmer, A, Cartwright, J, Litchfield, C, Samarawickrama, P, Doukov, T, Peterson, M.A, Moody, J.D.Show

To Be Published ? ? ? (?)

Primary Citation of related structures