9DK5 image
Deposition Date 2024-09-08
Release Date 2025-09-17
Last Version Date 2025-09-17
Entry Detail
PDB ID:
9DK5
Keywords:
TRANSPORT PROTEIN/TOXIN
Title:
Cryo-EM structure of human Nav1.6 in complex with PaurTx3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Paraphysa scrofa (Taxon ID: 269635)
Host Organism:
Homo sapiens
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9DK5 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sodium channel protein type 8 subunit alpha
Gene (Uniprot):SCN8A
Chain IDs:A
Chain Length:1980
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q9UQD0 Pfam ID:PF00520, PF11933, PF06512, PF00612
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sodium channel subunit beta-1
Gene (Uniprot):SCN1B
Chain IDs:B (auth: C)
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q07699 Pfam ID:PF07686
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Beta-theraphotoxin-Ps1a
Chain IDs:C (auth: H), D (auth: I), E (auth: J)
Chain Length:34
Number of Molecules:3
Biological Source:Paraphysa scrofa
UniProt ID:P84510 Pfam ID:PF07740
Ligand Molecules
9Z9
CLR
LPE
NAG
P3X
P5S
PCW
Y01
Primary Citation
Diverse modulation mechanisms of human Nav1.6 by gating modifier neurotoxins
To Be Published ? ? ? (?)
Primary Citation of related structures
9DK5