ISDA: 9DK5

Deposition Date 2024-09-08

Release Date 2025-09-17

Last Version Date 2025-09-17

Entry Detail

PDB ID:

9DK5

Keywords:

TRANSPORT PROTEIN/TOXIN

Title:

Cryo-EM structure of human Nav1.6 in complex with PaurTx3

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Paraphysa scrofa (Taxon ID: 269635)

Expression System(s):

Homo sapiens, Paraphysa scrofa

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.90 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Sodium channel protein type 8 subunit alpha
Gene (Uniprot):SCN8A
Chain IDs:A
Chain Length:1980
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9UQD0 Pfam ID:PF00520, PF11933, PF06512, PF00612, PF24609

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Sodium channel subunit beta-1
Gene (Uniprot):SCN1B
Chain IDs:B (auth: C)
Chain Length:218
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q07699 Pfam ID:PF07686

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Beta-theraphotoxin-Ps1a
Chain IDs:C (auth: H), D (auth: I), E (auth: J)
Chain Length:34
Number of Molecules:3
Biological Source:Paraphysa scrofa

UniProt ID:P84510 Pfam ID:PF07740

Ligand Molecules