9DK0 image
Deposition Date 2024-09-07
Release Date 2025-05-28
Last Version Date 2025-06-04
Entry Detail
PDB ID:
9DK0
Keywords:
Title:
CryoEM structures of yeast cytoplasmic dynein in the presence of ATP and Lis1.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.70 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynein heavy chain, cytoplasmic
Gene (Uniprot):DYN1
Chain IDs:A
Chain Length:2875
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Molecule:Nuclear distribution protein PAC1
Gene (Uniprot):PAC1
Chain IDs:B (auth: C)
Chain Length:495
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Multiple steps of dynein activation by Lis1 visualized by cryo-EM.
Nat.Struct.Mol.Biol. ? ? ? (2025)
PMID: 40410592 DOI: 10.1038/s41594-025-01558-w

Abstact

Cytoplasmic dynein-1 (dynein) is an essential molecular motor controlled in part by autoinhibition. Lis1, a key dynein regulator mutated in the neurodevelopmental disease lissencephaly, plays a role in dynein activation. We recently identified a structure of partially autoinhibited dynein bound to Lis1, which suggests an intermediate state in dynein's activation pathway. However, other structural information is needed to fully understand how Lis1 activates dynein. Here, we used cryo-EM and yeast dynein and Lis1 incubated with ATP at different time points to reveal conformations that we propose represent additional intermediate states in dynein's activation pathway. We solved 16 high-resolution structures, including 7 distinct dynein and dynein-Lis1 structures from the same sample. Our data support a model in which Lis1 relieves dynein autoinhibition by increasing its basal ATP hydrolysis rate and promoting conformations compatible with complex assembly and motility. Together, this analysis advances our understanding of dynein activation and the contribution of Lis1 to this process.

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