ISDA: 9DJW

Deposition Date 2024-09-06

Release Date 2025-09-10

Last Version Date 2025-10-15

Entry Detail

PDB ID:

9DJW

Keywords:

TOXIN

Title:

X-ray crystal structure of TNFa-VNAR D1 complex

Biological Source:

Source Organism:

Squalus acanthias (Taxon ID: 7797)
Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.43 Å

R-Value Free:

0.28

R-Value Work:

0.23

R-Value Observed:

0.23

Space Group:

P 1 21 1

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Antigen receptor
Gene (Uniprot):NAR
Chain IDs:A (auth: 0), B (auth: 1), F (auth: 5), G (auth: 6), H (auth: 7), L (auth: D), M (auth: E), N (auth: F), R (auth: J), S (auth: K), T (auth: L), X (auth: P), Y (auth: Q), Z (auth: R), DA (auth: V), EA (auth: W), FA (auth: X), JA (auth: b), KA (auth: c), LA (auth: d), PA (auth: h), QA (auth: i), RA (auth: j), VA (auth: n), WA (auth: o), XA (auth: p), BB (auth: t), CB (auth: u), DB (auth: v), HB (auth: z)
Chain Length:129
Number of Molecules:30
Biological Source:Squalus acanthias

UniProt ID:Q8JGJ1 Pfam ID:PF07686

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tumor necrosis factor
Gene (Uniprot):TNF
Chain IDs:C (auth: 2), D (auth: 3), E (auth: 4), I (auth: A), J (auth: B), K (auth: C), O (auth: G), P (auth: H), Q (auth: I), U (auth: M), V (auth: N), W (auth: O), AA (auth: S), BA (auth: T), CA (auth: U), GA (auth: Y), HA (auth: Z), IA (auth: a), MA (auth: e), NA (auth: f), OA (auth: g), SA (auth: k), TA (auth: l), UA (auth: m), YA (auth: q), ZA (auth: r), AB (auth: s), EB (auth: w), FB (auth: x), GB (auth: y)
Chain Length:156
Number of Molecules:30
Biological Source:Homo sapiens

UniProt ID:P01375 Pfam ID:PF00229

Ligand Molecules