9DJ8 image
Deposition Date 2024-09-06
Release Date 2025-03-19
Last Version Date 2025-03-19
Entry Detail
PDB ID:
9DJ8
Keywords:
VIRAL PROTEIN
Title:
RNA-nsp9 bound to the NiRAN domain of the E-RTC with an empty G-pocket
Biological Source:
Source Organism:
Severe acute respiratory syndrome coronavirus 2 (Taxon ID: 2697049)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.58 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9DJ8 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RNA-directed RNA polymerase
Gene (Uniprot):rep
Chain IDs:A
Chain Length:932
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08710 EC:2.7.7.48
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Non-structural protein 9
Gene (Uniprot):rep
Chain IDs:B (auth: G)
Chain Length:113
Number of Molecules:1
Biological Source:Severe acute respiratory syndrome coronavirus 2
UniProt ID:P0DTD1 Pfam ID:PF06478, PF00680, PF08710 EC:2.7.7.48
Ligand Molecules
AMP
ZN
Primary Citation
Matters arising: There is no structure of the catalytic intermediate of GTP-mediated mRNA capping by the SARS-CoV-2 NiRAN domain, and thus the mechanism remains unknown
To Be Published ? ? ? (?)
Primary Citation of related structures
9DJ8