9DIE image
Deposition Date 2024-09-05
Release Date 2025-09-10
Last Version Date 2025-09-10
Entry Detail
PDB ID:
9DIE
Keywords:
LYASE
Title:
Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution
Biological Source:
Source Organism:
Sicarius terrosus (Taxon ID: 571544)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.85 Å
R-Value Free:
0.16
R-Value Work:
0.11
R-Value Observed:
0.12
Space Group:
I 1 2 1
9DIE validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Dermonecrotic toxin StSicTox-betaIB1i
Mutagens:H47N
Chain IDs:A, B
Chain Length:301
Number of Molecules:2
Biological Source:Sicarius terrosus
UniProt ID:A0A0D4WV12 Pfam ID:PF13653 EC:3.1.4.4
Ligand Molecules
A1A43
A1A44
MG
MPD
NA
Primary Citation
Structure of phospholipase D BetaIB1i from Sicarius terrosus venom, H47N mutant bound to product and substrate sphingolipids at 1.85 A resolution
To Be Published ? ? ? (?)
Primary Citation of related structures
9DIE