ISDA: 9DET

Deposition Date 2024-08-29

Release Date 2025-09-10

Last Version Date 2025-09-10

Entry Detail

PDB ID:

9DET

Keywords:

MEMBRANE PROTEIN

Title:

Human V-ATPase Vo subcomplex (containing subunit isoform a4) bound to nanobody and inhibitor

Biological Source:

Source Organism(s):

Homo sapiens (Taxon ID: 9606)
Lama glama (Taxon ID: 9844)

Expression System(s):

Homo sapiens, Escherichia coli bl21(de3)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase 116 kDa subunit a 4
Gene (Uniprot):ATP6V0A4
Chain IDs:P (auth: a)
Chain Length:863
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q9HBG4 Pfam ID:PF01496

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase 21 kDa proteolipid subunit
Gene (Uniprot):ATP6V0B
Chain IDs:E (auth: b)
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q99437 Pfam ID:PF00137

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase 16 kDa proteolipid subunit
Gene (Uniprot):ATP6V0C
Chain IDs:F (auth: c), G (auth: g), H (auth: h), I (auth: i), J (auth: j), K (auth: k), L (auth: l), M (auth: m), N (auth: n)
Chain Length:155
Number of Molecules:9
Biological Source:Homo sapiens

UniProt ID:P27449 Pfam ID:PF00137

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit d 1
Gene (Uniprot):ATP6V0D1
Chain IDs:O (auth: d)
Chain Length:351
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:P61421 Pfam ID:PF01992

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit e 1
Gene (Uniprot):ATP6V0E1
Chain IDs:A (auth: e)
Chain Length:81
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O15342 Pfam ID:PF05493

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Ribonuclease kappa
Gene (Uniprot):RNASEK
Chain IDs:B (auth: f)
Chain Length:137
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q6P5S7 Pfam ID:PF23489

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:V-type proton ATPase subunit S1
Gene (Uniprot):ATP6AP1
Chain IDs:C (auth: o)
Chain Length:470
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:Q15904 Pfam ID:PF05827, PF20520

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Renin receptor
Gene (Uniprot):ATP6AP2
Chain IDs:D (auth: p)
Chain Length:350
Number of Molecules:1
Biological Source:Homo sapiens

UniProt ID:O75787 Pfam ID:PF07850, PF25294

Polymer Type:polypeptide(L)
Molecule:Anti V-ATPase Nanobody 2CAS66
Chain IDs:Q (auth: q)
Chain Length:139
Number of Molecules:1
Biological Source:Lama glama

Ligand Molecules