9DDQ image
Deposition Date 2024-08-28
Release Date 2025-07-09
Last Version Date 2025-07-16
Entry Detail
PDB ID:
9DDQ
Title:
E. coli TonB-ExbBD TonB bound to ExbB chain A
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.19 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbB
Gene (Uniprot):exbB
Chain IDs:A, B, C, D, E
Chain Length:244
Number of Molecules:5
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein TonB
Gene (Uniprot):tonB
Chain IDs:F
Chain Length:261
Number of Molecules:1
Biological Source:Escherichia coli
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Biopolymer transport protein ExbD
Gene (Uniprot):exbD
Chain IDs:G (auth: Y), H (auth: Z)
Chain Length:163
Number of Molecules:2
Biological Source:Escherichia coli
Ligand Molecules
Primary Citation
Cryo-EM structures of the E. coli Ton and Tol motor complexes.
Nat Commun 16 5506 5506 (2025)
PMID: 40595649 DOI: 10.1038/s41467-025-61286-z

Abstact

The Ton and Tol motor proteins use the proton gradient at the inner membrane of Gram-negative bacteria as an energy source. The generated force is transmitted through the periplasmic space to protein components associated with the outer membrane, either to maintain the outer membrane integrity for the Tol system, or to allow essential nutrients to enter the cell for Ton. We have solved the high-resolution structures of the E. coli TonB-ExbB-ExbD and TolA-TolQ-TolR complexes, revealing the inner membrane embedded engine parts of the Ton and Tol systems, and showing how TonB and TolA interact with the ExbBD and TolQR subcomplexes. Structural similarities between the two motor complexes suggest a common mechanism for the opening of the proton channel and the propagation of the proton motive force into movement of the TonB and TolA subunits. Because TonB and TolA bind at preferential ExbB or TolQ subunits, we propose a new mechanism of assembly of TonB and TolA with their respective ExbBD and TolQR subcomplexes and discuss its impact on the mechanism of action for the Ton and Tol systems.

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Primary Citation of related structures