ISDA: 9DAG

Deposition Date 2024-08-22

Release Date 2025-09-03

Last Version Date 2025-09-03

Entry Detail

PDB ID:

9DAG

Keywords:

HYDROLASE

Title:

Crystal structure of NDM-1 complexed with compound 13

Biological Source:

Source Organism:

Klebsiella pneumoniae (Taxon ID: 573)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.84 Å

R-Value Free:

0.22

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

P 1 21 1

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Metallo-beta-lactamase type 2
Gene (Uniprot):blaNDM-1
Chain IDs:A
Chain Length:233
Number of Molecules:1
Biological Source:Klebsiella pneumoniae

UniProt ID:C7C422 Pfam ID:PF00753 EC:3.5.2.6

Ligand Molecules

A1A3B

GOL

Primary Citation

Hit to Lead Optimization of Heteroaryl Phosphonates Reversible, Broad-Spectrum Inhibitors of Serine and Metallo Carbapenemases.

Jacobs, L.M.C, Chen, Y, Renslo, A.Show

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Primary Citation of related structures

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