9D8Y image
Deposition Date 2024-08-20
Release Date 2025-04-30
Last Version Date 2025-05-14
Entry Detail
PDB ID:
9D8Y
Keywords:
VIRAL PROTEIN/IMMUNE SYSTEM
Title:
Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with one gp120 rotated
Biological Source:
Source Organism:
Human immunodeficiency virus 1 (Taxon ID: 11676)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Mammalia
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.06 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9D8Y validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Mutations:T332N, A501C
Chain IDs:A, B, C
Chain Length:469
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
UniProt ID:Q2N0S6 Pfam ID:PF00517
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Envelope glycoprotein gp160
Gene (Uniprot):env
Mutations:I559P,T605C
Chain IDs:D, E, F
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
UniProt ID:D0PUM0
Polymer Type:polypeptide(L)
Molecule:VRC34.01 Fab Heavy Chain
Chain IDs:G, I, K
Chain Length:223
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:VRC34.01 Fab Light Chain
Chain IDs:H, J, L
Chain Length:212
Number of Molecules:3
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-cell surface glycoprotein CD4
Gene (Uniprot):CD4
Chain IDs:M, N, O
Chain Length:96
Number of Molecules:3
Biological Source:Homo sapiens
UniProt ID:P01730 Pfam ID:PF00047
Ligand Molecules
NAG
Primary Citation
Cryo-EM structure of HIV-1 BG505 SOSIP.664 Env bound to 3-sCD4, 3-VRC34.01 Fab with one gp120 rotated
To Be Published ? ? ? (?)
Primary Citation of related structures
9D8Y