9D82 image
Deposition Date 2024-08-18
Release Date 2025-01-15
Last Version Date 2025-01-15
Entry Detail
PDB ID:
9D82
Keywords:
Title:
Shigella flexneri bacteriophage B2 Icosahedral Reconstruction
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:B2 Capsid
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:389
Number of Molecules:9
Biological Source:Shigella phage B2
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:B2 Dec Gp45
Chain IDs:J, K, L, M, N, O, P, Q, R
Chain Length:99
Number of Molecules:9
Biological Source:Shigella phage B2
Ligand Molecules
Primary Citation
Moo19 and B2: Structures of Schitoviridae podophages with T = 9 geometry and tailspikes with esterase activity.
Sci Adv 10 eadt0022 eadt0022 (2024)
PMID: 39693418 DOI: 10.1126/sciadv.adt0022

Abstact

Podophages are, by far, the least well studied of all the bacteriophages. Despite being classified together due to their short, noncontractile tails, there is a huge amount of diversity among members of this group. Of the podophages, the N4-like Schitoviridae family is the least well studied structurally and is quite divergent from well-characterized podophages such as T7 and P22. In this work, we isolate and fully characterize two members of the Schitoviridae family by cryo-electron microscopy, genetics, and biochemistry. We describe the capsid features of Moo19 and B2, including a decoration protein. In addition, we have fully modeled the tail machinery for both phages and identify proteins with esterase activity. Genetic knockouts of the host reveal factors specific for host attachment including key modifications to the O-antigen on the lipopolysaccharide. Moo19 and B2 are both Schitoviridae members, yet some distinct differences in the genome and structure place them into distinct clades.

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Chemical

Disease

Primary Citation of related structures