9D70 image
Deposition Date 2024-08-16
Release Date 2025-01-22
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9D70
Keywords:
Title:
Cryo-EM of helical fibers formed by two peptides Pyn-K6 and Pyn-(EY)3
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
FILAMENT
Reconstruction Method:
HELICAL
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:PYR-K6
Chain IDs:A (auth: B)
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polypeptide(L)
Molecule:PYR-EY3
Chain IDs:B (auth: C)
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Context-Dependent Heterotypic Assemblies of Intrinsically Disordered Peptides.
J.Am.Chem.Soc. 147 2978 2983 (2025)
PMID: 39808585 DOI: 10.1021/jacs.4c12150

Abstact

Despite their critical role in context-dependent interactions for protein functions, intrinsically disordered regions (IDRs) are often overlooked for designing peptide assemblies. Here, we exploit IDRs to enable context-dependent heterotypic assemblies of intrinsically disordered peptides, where "context-dependent" refers to assembly behavior driven by interactions with other molecules. By attaching an aromatic segment to oppositely charged intrinsically disordered peptides, we achieve a nanofiber formation. Although the same-charged peptides cannot self-assemble, oppositely charged peptides form heterotypic nanofibers. Cryo-EM analysis reveals a β-sheet arrangement within the ordered core of these nanofibers, conformational heterogeneity, and a disorder-to-order continuum and shows a high number of hydrogen bonds between tyrosine and lysine ε-amine. Additionally, this work demonstrates a post-assembly morphological change resulting from local conformational flexibility. While equal molar mixtures of the charged intrinsically disordered peptides yield nanofibers, doubling the positively charged peptides after assembly produces bundles of nanofibers. Furthermore, reducing the number of aromatic amino acid residues reduces bundle formation. Demonstrating context-dependent self-assembly of intrinsically disordered peptides and revealing atomistic insights into heterotypic assemblies of intrinsically disordered peptides for the first time, this work illustrates a straightforward approach to enable heterotypic intrinsically disordered peptides to self-assemble for the design of adaptive, multifunctional peptide nanomaterials.

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