ISDA: 9D6U

Deposition Date 2024-08-15

Release Date 2025-08-20

Last Version Date 2025-08-20

Entry Detail

PDB ID:

9D6U

Keywords:

DNA

Title:

[F:Au+:F-pH11] Gold base pair with 2-thiothymidine homopair at pH 11.0

Biological Source:

Source Organism:

synthetic construct (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

4.21 Å

R-Value Free:

0.22

R-Value Work:

0.17

R-Value Observed:

0.17

Space Group:

H 3

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Macromolecular Entities

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*(DF)P*TP*GP*GP*AP*CP*AP*TP*CP*A)-3')
Chain IDs:A
Chain Length:21
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*CP*AP*(DF)P*AP*CP*A)-3')
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*CP*TP*GP*CP*T)-3')
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3')
Chain IDs:D
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Thiopyrimidine metal base pairs

Vecchioni, S, Imstepf, L, Lu, B, Woloszyn, K, Sha, R, Ohayon, Y.P.Show

To Be Published ? ? ? (?)

Primary Citation of related structures