9D4B image
Deposition Date 2024-08-12
Release Date 2025-08-20
Last Version Date 2025-08-20
Entry Detail
PDB ID:
9D4B
Keywords:
TRANSCRIPTION
Title:
Discovery of SMD-3236, a Potent, Highly Selective and Efficacious SMARCA2 Degrader for the Treatment of SMARC4-Deficient Human Cancers
Biological Source:
Source Organism(s):
Homo sapiens (Taxon ID: 9606)
Expression System(s):
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.30 Å
R-Value Free:
0.28
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
9D4B validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:von Hippel-Lindau disease tumor suppressor
Gene (Uniprot):VHL
Chain IDs:A, D
Chain Length:161
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P40337 Pfam ID:PF01847, PF17211 EC:2.3.2.B13
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-B
Gene (Uniprot):ELOB
Chain IDs:B, E
Chain Length:104
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q15370 Pfam ID:PF00240
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Elongin-C
Gene (Uniprot):ELOC
Chain IDs:C, F
Chain Length:96
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:Q15369 Pfam ID:PF03931
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Probable global transcription activator SNF2L2
Gene (Uniprot):SMARCA2
Chain IDs:G, H
Chain Length:123
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:B4DNT1 Pfam ID:PF00439
Ligand Molecules
A1A1U
Primary Citation
Discovery of SMD-3236, a Potent, Highly Selective and Efficacious SMARCA2 Degrader for the Treatment of SMARC4-Deficient Human Cancers
To Be Published ? ? ? (?)
Primary Citation of related structures
9D4B
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