9D2X image
Deposition Date 2024-08-09
Release Date 2024-10-30
Last Version Date 2024-10-30
Entry Detail
PDB ID:
9D2X
Keywords:
TRANSCRIPTION/DNA
Title:
SpiD ETS-domain (168-273) in complex with the DNA sequence d(AATAAAAGGAAGTGGG)
Biological Source:
Source Organism:
Raja eglanteria (Taxon ID: 33514)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.29 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1
9D2X validation report
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*TP*AP*AP*AP*AP*GP*GP*AP*AP*GP*TP*GP*GP*G)-3')
Chain IDs:A (auth: C), D (auth: A)
Chain Length:16
Number of Molecules:2
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*CP*CP*CP*AP*CP*TP*TP*CP*CP*TP*TP*TP*TP*AP*T)-3')
Chain IDs:B (auth: D), E (auth: B)
Chain Length:16
Number of Molecules:2
Biological Source:synthetic construct
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SpiD
Chain IDs:C (auth: F), F (auth: E)
Chain Length:107
Number of Molecules:2
Biological Source:Raja eglanteria
UniProt ID:Q9DEW5 Pfam ID:PF00178
Ligand Molecules
EPE
Primary Citation
The Structure of the DNA-binding Domain of the Class III ETS-Family Member SpiD from Raja eglanteria
To be published ? ? ? (?)
Primary Citation of related structures
9D2X