9CYF image
Deposition Date 2024-08-02
Release Date 2025-08-13
Last Version Date 2025-08-13
Entry Detail
PDB ID:
9CYF
Title:
Cryo-EM structure of DA03E17 Fab in complex with influenza virus neuraminidase from A/Kansas/14/2017 (H3N2)
Biological Source:
Source Organism:
Influenza A virus (Taxon ID: 11320)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.86 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Neuraminidase
Gene (Uniprot):NA
Chain IDs:A, D (auth: B), G (auth: C), J (auth: D)
Chain Length:469
Number of Molecules:4
Biological Source:Influenza A virus
Polymer Type:polypeptide(L)
Molecule:DA03E17 Fab heavy chain
Chain IDs:B (auth: H), E, H (auth: F), K (auth: G)
Chain Length:231
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:DA03E17 Fab light chain
Chain IDs:C (auth: L), F (auth: I), I (auth: J), L (auth: K)
Chain Length:215
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural basis of broad protection against influenza virus by human antibodies targeting the neuraminidase active site via a recurring motif in CDR H3.
Nat Commun 16 7067 7067 (2025)
PMID: 40750588 DOI: 10.1038/s41467-025-62174-2

Abstact

Influenza viruses evolve rapidly, driving seasonal epidemics and posing global pandemic threats. While neuraminidase (NA) has emerged as a vaccine target, shared molecular features of NA antibody responses are still not well understood. Here, we describe cryo-electron microscopy structures of the broadly protective human antibody DA03E17, which was previously identified from an H1N1-infected donor, in complex with NA from A/H1N1, A/H3N2, and B/Victoria-lineage viruses. DA03E17 targets the highly conserved NA active site using its long CDR H3, which features a DR (Asp-Arg) motif that engages catalytic residues and mimics sialic acid interactions. We further demonstrate that this motif is conserved among several NA active site-targeting antibodies, indicating a common receptor mimicry strategy. We also identified BCR sequences containing this DR motif across all donors in a healthy human repertoire database, suggesting that such precursors may be relatively common and have vaccine targeting potential. Our findings reveal shared molecular features in NA active site-targeting antibodies that can be harnessed to design broad, immune-focused influenza vaccines.

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Primary Citation of related structures
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