9CYA image
Deposition Date 2024-08-01
Release Date 2025-08-06
Last Version Date 2025-08-06
Entry Detail
PDB ID:
9CYA
Keywords:
LYASE
Title:
C387S variant of D-ornithine/D-lysine decarboxylase complexed with HEPES and putrescine
Biological Source:
Source Organism:
Salmonella enterica subsp. enterica serovar Typhimurium (Taxon ID: 90371)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.40 Å
R-Value Free:
0.18
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
C 1 2 1
9CYA validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:D-ornithine/D-lysine decarboxylase
Gene (Uniprot):dokD
Mutagens:C387S
Chain IDs:A
Chain Length:478
Number of Molecules:1
Biological Source:Salmonella enterica subsp. enterica serovar Typhimurium
UniProt ID:Q8ZNC4 Pfam ID:PF00278, PF02784 EC:4.1.1.116
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
LLP A LYS modified residue
Ligand Molecules
ACT
CL
DMS
EDO
EPE
GOL
NA
PUT
Primary Citation
Structure of C387S variant of D-ornithine/D-lysine decarboxylase complexed with HEPES and putrescine
To Be Published ? ? ? (?)
Primary Citation of related structures
9CYA