9CY8 image
Entry Detail
PDB ID:
9CY8
Title:
Constrained b-hairpins targeting the EphA4 ligand binding domain
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-08-01
Release Date:
2024-12-25
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ephrin type-A receptor 4
Chain IDs:A
Chain Length:185
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Constrained b-hairpin
Chain IDs:B
Chain Length:13
Number of Molecules:1
Biological Source:synthetic construct
Ligand Molecules
Primary Citation
Constrained beta-Hairpins Targeting the EphA4 Ligand Binding Domain.
J.Med.Chem. 67 22245 22253 (2024)
PMID: 39656022 DOI: 10.1021/acs.jmedchem.4c02286

Abstact

The activity of the receptor tyrosine kinase EphA4 has been implicated in several pathologies including oncology (gastric and pancreatic cancers) and neurodegenerative diseases (amyotrophic lateral sclerosis and Alzheimer's disease). However, advances in validating EphA4 as a possible drug target have been limited by the lack of suitable pharmacological inhibitors. Recently, we reported on the design of potent EphA4 agonistic agents targeting its ligand binding domain (LBD). Based on previous studies with a phage display cyclic peptide inhibitor, we designed a β-hairpin mimetic with high affinity for EphA4-LBD. These agents hold great promise for further validation and development of EphA4-based therapeutics. Moreover, our studies introduce a possible strategy for the design of constrained β-hairpin peptides.

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