9CXM image
Entry Detail
PDB ID:
9CXM
Keywords:
Title:
Crystal structure of Human FN3K bound with ATP and DMF
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-07-31
Release Date:
2024-12-18
Method Details:
Experimental Method:
Resolution:
1.76 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Fructosamine-3-kinase
Chain IDs:A, B
Chain Length:291
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The molecular basis of Human FN3K mediated phosphorylation of glycated substrates.
Nat Commun 16 941 941 (2025)
PMID: 39843453 DOI: 10.1038/s41467-025-56207-z

Abstact

Glycation, a non-enzymatic post-translational modification occurring on proteins, can be actively reversed via site-specific phosphorylation of the fructose-lysine moiety by FN3K kinase, to impact the cellular function of the target protein. A regulatory axis between FN3K and glycated protein targets has been associated with conditions like diabetes and cancer. However, the molecular basis of this relationship has not been explored so far. Here, we determined a series of crystal structures of HsFN3K in the apo-state, and in complex with different nucleotide analogs together with a sugar substrate mimic to reveal the features important for its kinase activity and substrate recognition. Additionally, the dynamics in sugar substrate binding during the kinase catalytic cycle provide important mechanistic insights into HsFN3K function. Our structural work provides the molecular basis for rational small molecule design targeting FN3K.

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