9CX3 image
Entry Detail
PDB ID:
9CX3
EMDB ID:
Title:
Structure of SH3 domain of Src in complex with beta-arrestin 1
Biological Source:
PDB Version:
Deposition Date:
2024-07-30
Release Date:
2024-11-13
Method Details:
Experimental Method:
Resolution:
3.47 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Nanobody 32
Chain IDs:A
Chain Length:124
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Description:Beta-arrestin-1
Mutations:C59V, P120C, C125S, C140L, C150V, C242V, C251V, C269S
Chain IDs:E (auth: B)
Chain Length:392
Number of Molecules:1
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Description:Proto-oncogene tyrosine-protein kinase Src
Mutations:R95C
Chain IDs:B (auth: C)
Chain Length:85
Number of Molecules:1
Biological Source:Gallus gallus
Polymer Type:polypeptide(L)
Description:Antibody fragment Fab30, heavy chain
Chain IDs:C (auth: H)
Chain Length:237
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Antibody fragment Fab30, light chain
Chain IDs:F (auth: L)
Chain Length:215
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Vasopressin V2 receptor
Chain IDs:D (auth: V)
Chain Length:29
Number of Molecules:1
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
SEP D SER modified residue
TPO D THR modified residue
Ligand Molecules
Primary Citation
Beta-arrestin 1 mediated Src activation via Src SH3 domain revealed by cryo-electron microscopy.
Biorxiv ? ? ? (2024)
PMID: 39131402 DOI: 10.1101/2024.07.31.605623

Abstact

Beta-arrestins (βarrs) are key regulators and transducers of G-protein coupled receptor signaling; however, little is known of how βarrs communicate with their downstream effectors. Here, we use cryo-electron microscopy to elucidate how βarr1 recruits and activates non-receptor tyrosine kinase Src. βarr1 binds Src SH3 domain via two distinct sites: a polyproline site in the N-domain and a non-proline site in the central crest region. At both sites βarr1 interacts with the aromatic surface of SH3 which is critical for Src autoinhibition, suggesting that βarr1 activates Src by SH3 domain displacement. Binding of SH3 to the central crest region induces structural rearrangements in the β-strand V, finger, and middle loops of βarr1 and interferes with βarr1 coupling to the receptor core potentially impacting receptor desensitization and downstream signaling.

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Primary Citation of related structures