9CUY image
Entry Detail
PDB ID:
9CUY
EMDB ID:
Keywords:
Title:
Bacteriophage PhiTE extended baseplate
Biological Source:
PDB Version:
Deposition Date:
2024-07-26
Release Date:
2025-04-16
Method Details:
Experimental Method:
Resolution:
3.24 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tail sheath protein
Chain IDs:C (auth: A), D (auth: C), E, H (auth: B), I (auth: D), J (auth: F)
Chain Length:473
Number of Molecules:6
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Tail tube protein
Chain IDs:F (auth: J), G (auth: H), K (auth: I), L (auth: G)
Chain Length:156
Number of Molecules:4
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Tube initiator protein
Chain IDs:M (auth: K), N (auth: L)
Chain Length:284
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Spacer protein
Chain IDs:U (auth: N), V (auth: M)
Chain Length:163
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Wedge 1 protein
Chain IDs:Q (auth: O), S (auth: P)
Chain Length:165
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Wedge 2 protein
Chain IDs:A (auth: T), B (auth: S), R, T (auth: U)
Chain Length:494
Number of Molecules:4
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Putative tape measure protein
Chain IDs:EA (auth: W)
Chain Length:811
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Hub protein
Chain IDs:O (auth: X)
Chain Length:330
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Putative baseplate assembly protein
Chain IDs:P (auth: Y)
Chain Length:247
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Short tail fiber
Chain IDs:BA (auth: c), CA (auth: a), DA (auth: b), IA (auth: f), JA (auth: d), KA (auth: e)
Chain Length:473
Number of Molecules:6
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Putative tail fiber protein
Chain IDs:Y (auth: g), Z (auth: i), AA (auth: h), FA (auth: j), GA (auth: k), HA (auth: l)
Chain Length:156
Number of Molecules:6
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Description:Sheath initiator protein
Chain IDs:W (auth: n), X (auth: m)
Chain Length:163
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Ligand Molecules
Primary Citation
Global structural survey of the flagellotropic myophage phi TE infecting agricultural pathogen Pectobacterium atrosepticum.
Nat Commun 16 3257 3257 (2025)
PMID: 40188083 DOI: 10.1038/s41467-025-58514-x

Abstact

Bacteriophages offer a promising alternative to drug-based treatments due to their effectiveness and host specificity. This is particularly important in agriculture as a biocontrol agent of plant diseases. Phage engineering is facilitated by structural knowledge. However, structural information regarding bacteriophages infecting plant pathogens is limited. Here, we present the cryo-EM structure of bacteriophage φTE that infects plant pathogen Pectobacterium atrosepticum. The structure reveals a distinct neck topology compared with other myophages, where tail terminator proteins compensate for reduced connectivity between sheath subunits. A contact network between tail fibers, the sheath initiator, and baseplate wedge proteins provides insights into triggers that transduce conformational changes from the baseplate to the sheath to orchestrate contraction. We observe two distinct oligomeric states of the tape measure protein (TMP), which is six-fold in regions proximal to the N-terminus and throughout most of the tail, while three-fold at the C-terminus, indicating that the TMP may be proteolytically cleaved. Our results provide a structural atlas of the model bacteriophage φTE, enhancing future interpretation of phage host interactions in pectobacteria. We anticipate that our structure will inform rational design of biocontrol agents against plant pathogens that cause diseases such as soft rot and blackleg disease in potatoes.

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Primary Citation of related structures