9CUY image
Deposition Date 2024-07-26
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9CUY
Keywords:
Title:
Bacteriophage PhiTE extended baseplate
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.24 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tail sheath protein
Gene (Uniprot):phiTE_222
Chain IDs:C (auth: A), D (auth: C), E, H (auth: B), I (auth: D), J (auth: F)
Chain Length:473
Number of Molecules:6
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Tail tube protein
Gene (Uniprot):phiTE_223
Chain IDs:F (auth: J), G (auth: H), K (auth: I), L (auth: G)
Chain Length:156
Number of Molecules:4
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Tube initiator protein
Gene (Uniprot):phiTE_229
Chain IDs:M (auth: K), N (auth: L)
Chain Length:284
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Spacer protein
Gene (Uniprot):phiTE_230
Chain IDs:U (auth: N), V (auth: M)
Chain Length:163
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Wedge 1 protein
Gene (Uniprot):phiTE_235
Chain IDs:Q (auth: O), S (auth: P)
Chain Length:165
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Wedge 2 protein
Gene (Uniprot):phiTE_234
Chain IDs:A (auth: T), B (auth: S), R, T (auth: U)
Chain Length:494
Number of Molecules:4
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Putative tape measure protein
Gene (Uniprot):phiTE_228
Chain IDs:EA (auth: W)
Chain Length:811
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Hub protein
Gene (Uniprot):phiTE_231
Chain IDs:O (auth: X)
Chain Length:330
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Putative baseplate assembly protein
Gene (Uniprot):phiTE_232
Chain IDs:P (auth: Y)
Chain Length:247
Number of Molecules:1
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Short tail fiber
Gene (Uniprot):phiTE_236
Chain IDs:BA (auth: c), CA (auth: a), DA (auth: b), IA (auth: f), JA (auth: d), KA (auth: e)
Chain Length:473
Number of Molecules:6
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Putative tail fiber protein
Gene (Uniprot):phiTE_241
Chain IDs:Y (auth: g), Z (auth: i), AA (auth: h), FA (auth: j), GA (auth: k), HA (auth: l)
Chain Length:156
Number of Molecules:6
Biological Source:Pectobacterium phage phiTE
Polymer Type:polypeptide(L)
Molecule:Sheath initiator protein
Gene (Uniprot):phiTE_233
Chain IDs:W (auth: n), X (auth: m)
Chain Length:163
Number of Molecules:2
Biological Source:Pectobacterium phage phiTE
Ligand Molecules
Primary Citation
Global structural survey of the flagellotropic myophage phi TE infecting agricultural pathogen Pectobacterium atrosepticum.
Nat Commun 16 3257 3257 (2025)
PMID: 40188083 DOI: 10.1038/s41467-025-58514-x

Abstact

Bacteriophages offer a promising alternative to drug-based treatments due to their effectiveness and host specificity. This is particularly important in agriculture as a biocontrol agent of plant diseases. Phage engineering is facilitated by structural knowledge. However, structural information regarding bacteriophages infecting plant pathogens is limited. Here, we present the cryo-EM structure of bacteriophage φTE that infects plant pathogen Pectobacterium atrosepticum. The structure reveals a distinct neck topology compared with other myophages, where tail terminator proteins compensate for reduced connectivity between sheath subunits. A contact network between tail fibers, the sheath initiator, and baseplate wedge proteins provides insights into triggers that transduce conformational changes from the baseplate to the sheath to orchestrate contraction. We observe two distinct oligomeric states of the tape measure protein (TMP), which is six-fold in regions proximal to the N-terminus and throughout most of the tail, while three-fold at the C-terminus, indicating that the TMP may be proteolytically cleaved. Our results provide a structural atlas of the model bacteriophage φTE, enhancing future interpretation of phage host interactions in pectobacteria. We anticipate that our structure will inform rational design of biocontrol agents against plant pathogens that cause diseases such as soft rot and blackleg disease in potatoes.

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Primary Citation of related structures